##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index14_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	23416127	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.96375536398483	33.0	31.0	34.0	30.0	34.0
2	32.09675118348991	33.0	31.0	34.0	30.0	34.0
3	32.16704214151213	34.0	31.0	34.0	30.0	34.0
4	35.6858816148375	37.0	35.0	37.0	33.0	37.0
5	35.64895155377317	37.0	35.0	37.0	33.0	37.0
6	35.62520334810279	37.0	35.0	37.0	33.0	37.0
7	35.64206190033049	37.0	35.0	37.0	33.0	37.0
8	35.626433952976086	37.0	35.0	37.0	33.0	37.0
9	37.29735135105818	39.0	37.0	39.0	34.0	39.0
10-14	37.48103558714043	39.2	37.2	39.4	33.4	39.4
15-19	38.41528566188593	40.0	38.0	41.0	33.4	41.0
20-24	38.22275074780727	40.0	38.0	41.0	33.0	41.0
25-29	37.911501496383245	40.0	37.6	41.0	32.8	41.0
30-34	37.71201548402945	40.0	37.0	41.0	32.0	41.0
35-39	37.69437898931791	40.0	37.0	41.0	32.0	41.0
40-44	37.38444858109968	39.6	36.4	41.0	31.0	41.0
45-49	36.93793543227709	39.0	35.2	40.8	30.6	41.0
50-54	36.6163183347955	38.8	35.0	40.4	30.2	41.0
55-59	36.328940750961934	38.4	35.0	40.4	30.0	41.0
60-64	35.52813424696577	37.2	34.2	40.0	28.8	41.0
65-69	34.65450391518631	35.6	33.8	39.0	28.0	41.0
70-74	33.7409001667953	35.0	33.0	37.8	26.6	39.8
75-79	32.77716678765878	35.0	32.4	36.4	25.8	39.0
80-84	31.81567476124468	35.0	31.6	35.2	24.6	37.2
85-89	30.71783733492733	34.0	31.0	35.0	20.2	36.0
90	29.795018450318448	34.0	31.0	35.0	2.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	244.0
11	2543.0
12	7656.0
13	15534.0
14	24682.0
15	34243.0
16	42490.0
17	49906.0
18	57816.0
19	66828.0
20	77889.0
21	91918.0
22	106771.0
23	126372.0
24	150158.0
25	181674.0
26	218939.0
27	264585.0
28	321156.0
29	391350.0
30	480241.0
31	599051.0
32	756191.0
33	980712.0
34	1336968.0
35	1938468.0
36	2999518.0
37	4377103.0
38	4915196.0
39	2736906.0
40	63019.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.77049569298971	12.340375502746461	10.195802234929799	51.69332656933403
2	22.024320052699885	19.16609713790335	35.36074041558046	23.448842393816307
3	25.675330010354315	21.243235356508166	22.54995523527277	30.531479397864754
4	27.620687672163918	27.638106471803976	19.060285452982356	25.680920403049747
5	29.251281630609256	29.89872138147368	21.398670325599756	19.451326662317303
6	24.241680584180227	32.73191622977974	21.651400110975658	21.375003075064374
7	21.444085046477092	18.794085751225513	37.40730315842617	22.354526043871232
8	21.56659937494122	22.155597728795353	28.958094137060712	27.31970875920271
9	21.552039410376743	21.00049281762831	31.43875798170019	26.00870979029476
10-14	24.558376097174357	26.232668295829097	24.63619645739388	24.572759149602668
15-19	24.92186286514707	25.11731546584134	25.087723722056587	24.873097946955003
20-24	24.671890056561065	25.377245956756976	25.4288758652426	24.52198812143936
25-29	24.554141959745902	25.425241250689606	25.34496158872671	24.675655200837785
30-34	24.555586068729678	25.360763709716295	25.319246753619275	24.764403467934756
35-39	24.579130710746565	25.502090236615594	25.284460379129943	24.634318673507902
40-44	24.540351123002775	25.345742449889247	25.417521875586708	24.696384551521273
45-49	24.491574051235133	25.402991568213345	25.342039192011484	24.76339518854004
50-54	24.484860461171632	25.49528764179544	25.399591120531944	24.620260776500984
55-59	24.519905274629625	25.4390932332625	25.334877833336435	24.706123658771446
60-64	24.432421596677685	25.450655646496333	25.447597050423532	24.66932570640245
65-69	24.449951639970134	25.57451623228285	25.426824926578444	24.54870720116857
70-74	24.521170636692126	25.50165066095239	25.3366345328116	24.640544169543883
75-79	24.503203935132266	25.459066534589965	25.405264456742767	24.632465073535002
80-84	24.441314825466893	25.593917517139463	25.42258974010643	24.54217791728721
85-89	24.559776328240687	25.559592153551826	25.32087739718245	24.559754121025037
90	24.284803746139076	25.665452774574803	25.541808419459194	24.50793505982693
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.46382226232375
2	45.473162446516184
3	56.20680940821906
4	53.30160807521367
5	48.70260829292656
6	45.6166836592446
7	43.798611090348324
8	48.88630813414393
9	47.5607492006715
10-14	49.13113524677702
15-19	49.79496081210207
20-24	49.193878178000425
25-29	49.22979716058368
30-34	49.31998953666443
35-39	49.21344938425447
40-44	49.23673567452405
45-49	49.25496923977518
50-54	49.10512123767262
55-59	49.22602893340107
60-64	49.10174730308013
65-69	48.998658841138706
70-74	49.161714806236006
75-79	49.13566900866727
80-84	48.9834927427541
85-89	49.119530449265724
90	48.79273880596601
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	73.0
1	40.5
2	7.5
3	6.5
4	7.0
5	9.0
6	14.0
7	23.5
8	30.5
9	50.5
10	69.0
11	103.5
12	174.5
13	282.0
14	455.5
15	701.5
16	1238.5
17	2205.5
18	3776.0
19	6631.0
20	8489.0
21	11658.5
22	19683.5
23	31567.0
24	48332.0
25	70887.0
26	99896.5
27	136619.0
28	175910.0
29	217598.0
30	240526.0
31	263344.5
32	309523.0
33	360294.5
34	415486.0
35	468835.0
36	524056.0
37	585123.0
38	637722.5
39	682500.5
40	706094.0
41	721554.5
42	751915.0
43	779836.0
44	796580.0
45	804396.0
46	804711.5
47	797161.0
48	795582.5
49	796621.0
50	795465.0
51	788754.5
52	781067.0
53	768579.0
54	762229.5
55	763385.5
56	751864.5
57	736386.0
58	713018.5
59	683518.0
60	669422.0
61	652019.5
62	614365.0
63	566532.5
64	510318.5
65	453927.0
66	393965.5
67	331913.0
68	275398.0
69	221582.5
70	194433.0
71	170400.0
72	126357.5
73	89791.0
74	59619.0
75	36486.5
76	20947.5
77	11164.5
78	5356.5
79	2306.0
80	1302.0
81	923.5
82	391.0
83	168.5
84	80.5
85	47.5
86	25.5
87	15.5
88	12.5
89	9.5
90	8.0
91	6.5
92	3.0
93	0.5
94	0.5
95	0.5
96	0.5
97	1.0
98	0.5
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.008682050622632853
3	0.04450778730402342
4	0.04433269430081243
5	0.04440102327767525
6	0.008468522569936522
7	0.015019563226659986
8	0.011312716231851663
9	0.007627222042312975
10-14	0.01050558019265953
15-19	0.00924064000848646
20-24	0.012613529128877718
25-29	0.00525364420854055
30-34	0.010936052746895334
35-39	0.006836314135125761
40-44	0.002150654546757455
45-49	6.012949963928706E-4
50-54	9.771043691384148E-4
55-59	0.00168174694303631
60-64	6.619369633586288E-4
65-69	0.00747091950773926
70-74	0.0030696792855624674
75-79	0.004467860974618048
80-84	0.0018192590089727476
85-89	0.0013426643953545348
90	0.012845847650211326
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.3416127E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.00048285852245
#Duplication Level	Relative count
1	100.0
2	30.93266152311972
3	16.330236708129952
4	10.33118144124285
5	7.087597753634598
6	5.1456463549047395
7	3.8744554663307618
8	3.270875977536346
9	2.6662467852831577
10++	30.301789744397208
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4938435	2.599347	5.2913527	1
CCTGG	4919070	2.5790842	6.176937	1
GAAGA	4966150	2.5560188	5.1172247	2
CTTCT	5111655	2.5166392	5.533671	1
CTGGA	4720280	2.447287	8.800568	1
TCCAG	4631195	2.3621447	5.7383294	2
CTGCT	4604300	2.3392928	5.064717	1
CTCCT	4625005	2.3116891	7.486614	1
CTGGG	4305515	2.2946231	8.486437	1
CAGGA	4300850	2.238535	5.645472	1
CCCAG	4236480	2.1936955	7.264009	1
CTTCA	4434545	2.1918	5.6907043	1
CTCCA	4348880	2.1821625	8.137454	1
CAGAA	4154290	2.1034749	5.1912284	1
CTCTG	4026205	2.0455818	6.308878	1
CTGCA	3923175	2.0010183	5.0068264	1
CTGGC	3585130	1.8796952	5.3862414	1
TGGAA	3625900	1.8589495	5.2503757	2
CTGAA	3665420	1.8487228	5.444396	1
CTCAG	3435865	1.7524656	6.140882	1
CTGGT	3217510	1.6616695	5.134247	1
CTTGG	3160070	1.6320047	5.3284025	1
>>END_MODULE
